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PowerIDE User Guide

Software & Tools IDEs & Notebooks

PowerIDE provides interactive access to the HPC cluster through a web browser. Run Jupyter notebo...

Updated 1 day ago by levk

Submitting Your First Job

Getting Started First Steps

Once you have your account and partition from check_my_partitions, you are ready to submit your ...

Updated 1 day ago by levk

Useful Tools

Getting Started First Steps

External tools and resources to help with TAU HPC usage. HPC Helper Toolkit An AI-powered toolkit...

Updated 1 day ago by levk

Security Installations

Reference

Required security software for TAU workstations and servers. NAC — Forescout Network Access Contr...

Updated 1 day ago by levk

Palo Alto VPN

Getting Started Access & Setup

TAU uses Palo Alto GlobalProtect VPN with two-factor authentication (Google Authenticator). Requi...

Updated 1 day ago by levk

Troubleshooting

Reference

Common errors and solutions for job submission and cluster usage. Job Submission Errors No partit...

Updated 5 days ago by levk

PBS to Slurm Migration

Reference

Quick reference for users migrating from the old PBS/Torque system to Slurm. Command Equivalents ...

Updated 5 days ago by levk

Common Slurm Commands

Reference

Quick reference for the most common Slurm commands on the TAU HPC cluster. Submitting Jobs Comman...

Updated 5 days ago by levk

RELION

Software & Tools Scientific Software

RELION is a cryo-EM structure determination package. On the TAU HPC cluster it runs on the dedica...

Updated 5 days ago by levk

Jupyter on Slurm

Software & Tools IDEs & Notebooks

Run JupyterLab interactively on a compute node via SSH port forwarding. For a simpler browser-bas...

Updated 5 days ago by levk

Conda & Mamba Environments

Software & Tools Environment & Packages

Conda and Mamba let you create isolated software environments with specific package versions. Use...

Updated 6 days ago by levk

AlphaFold3

Software & Tools Scientific Software

AlphaFold3 runs via Singularity/Apptainer container on GPU nodes with the af3 GRES constraint. L...

Updated 6 days ago by levk

AlphaFold

Software & Tools Scientific Software

AlphaFold is an AI program developed by DeepMind that predicts protein structures from amino acid...

Updated 6 days ago by levk

GPUs, Constraints & Features

Running Jobs Slurm Basics

Beyond standard CPU/memory resources, the cluster provides special resources you can request via ...

Updated 6 days ago by levk

Finding Your Account and Partition

Getting Started First Steps

Before submitting jobs, you need to know which account and partition you have access to. These ar...

Updated 6 days ago by levk

Storage and Scratch

Getting Started Environment

Home Directory Every user has a personal home directory at /home/your_username. This is your def...

Updated 6 days ago by levk

Environment Modules

Getting Started Environment

Environment Modules let you dynamically load and unload software packages without conflicts betwe...

Updated 6 days ago by levk

Accessing the System

Getting Started Access & Setup

Requirements You must be a member of the power group Valid Tel Aviv University username and passw...

Updated 6 days ago by levk

Managing & Monitoring Jobs

Running Jobs Slurm Basics

Once your job is submitted, use these commands to track and manage it. Checking Job Status # Your...

Updated 6 days ago by levk

Interactive Jobs

Running Jobs Slurm Basics

Interactive jobs give you a shell directly on a compute node — useful for testing, debugging, or ...

Updated 6 days ago by levk